GetUmapCODEX: Runs UMAP on CODEX protein expression. If CleanCODEX has been...
In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring
GetUmapCODEX R Documentation
Runs UMAP on CODEX protein expression. If CleanCODEX has been run,
calls UMAP on the cleaned CODEX protein expression. Otherwise,
runs UMAP on the original or filtered CODEX protein expression.
Description
Runs UMAP on CODEX protein expression. If CleanCODEX has been run,
calls UMAP on the cleaned CODEX protein expression. Otherwise,
runs UMAP on the original or filtered CODEX protein expression.
Usage
GetUmapCODEX(stvea_object, ...)
Arguments
stvea_object
STvEA.data class object
...
parameters to pass into umap
CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.
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| GetUmapCODEX | R Documentation |
Runs UMAP on CODEX protein expression. If CleanCODEX has been run, calls UMAP on the cleaned CODEX protein expression. Otherwise, runs UMAP on the original or filtered CODEX protein expression.
Description
Runs UMAP on CODEX protein expression. If CleanCODEX has been run, calls UMAP on the cleaned CODEX protein expression. Otherwise, runs UMAP on the original or filtered CODEX protein expression.
Usage
GetUmapCODEX(stvea_object, ...)
Arguments
stvea_object |
STvEA.data class object |
... |
parameters to pass into umap |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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