FindWeights: Calculates weights of the k nearest anchors for each cell in...

In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring

Calculates weights of the k nearest anchors for each cell in the query dataset

Description

Calculates weights of the k nearest anchors for each cell in the query dataset

Usage

FindWeights(
  neighbors,
  anchors,
  query_mat,
  integration.matrix,
  k.weight = 300,
  sd.weight = 1,
  eps = 0,
  verbose = TRUE
)

Arguments

neighbors	list of neighbors in CCA space as output by FindNN
anchors	list of anchors as output by FindAnchorPairs or FilterAnchors
query_mat	a (cells x features) matrix for the query dataset (protein or mRNA)
integration.matrix	the output of FindIntegrationMatrix
sd.weight	standard deviation of the Gaussian kernel
eps	Error bound on the neighbor finding algorithm (from RANN)
verbose	...
k	number of nearest anchors to use in correction

CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.