Files in CamaraLab/STvEA
Spatially-resolved Transcriptomics via Epitope Anchoring

.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/STvEA-package.R R/clustering.R R/data_processing.R R/feature_scores.R R/mapping.R R/objects.R R/plotting.R R/seurat_anchor_correction.R README.md
data/codex_balbc1.RData
examples/codex_tutorial.Rmd examples/codex_tutorial.md
examples/codex_tutorial_files/figure-markdown_github/unnamed-chunk-10-1.png
examples/codex_tutorial_files/figure-markdown_github/unnamed-chunk-11-1.png
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examples/codex_tutorial_files/figure-markdown_github/unnamed-chunk-16-1.png
examples/mapping_tutorial.Rmd examples/mapping_tutorial.md
examples/mapping_tutorial_files/figure-markdown_github/unnamed-chunk-12-1.png
examples/mapping_tutorial_files/figure-markdown_github/unnamed-chunk-18-1.png
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examples/mapping_tutorial_files/figure-markdown_github/unnamed-chunk-28-1.png
examples/mapping_tutorial_files/figure-markdown_github/unnamed-chunk-29-1.png
examples/seurat_tutorial.Rmd examples/seurat_tutorial.md
examples/seurat_tutorial_files/figure-markdown_github/unnamed-chunk-15-1.png
examples/seurat_tutorial_files/figure-markdown_github/unnamed-chunk-16-1.png
examples/seurat_tutorial_files/figure-markdown_github/unnamed-chunk-17-1.png
examples/seurat_tutorial_files/figure-markdown_github/unnamed-chunk-18-1.png
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inst/python/consensus_clustering.py
man/AdjScoreClustersCITE.Rd man/AdjScoreClustersCITE.internal.Rd man/AdjScoreClustersCODEX.Rd man/AdjScoreClustersCODEX.internal.Rd man/AdjScoreGenes.Rd man/AdjScoreGenes.internal.Rd man/AdjScoreHeatmap.Rd man/AdjScoreProteins.Rd man/AdjScoreProteins.internal.Rd man/AnchorCorrection.Rd man/CleanCITE.Rd man/CleanCITE.internal.Rd man/CleanCODEX.Rd man/CleanCODEX.internal.Rd man/ClusterCODEX.Rd man/ClusterCODEX.internal.Rd man/ConsensusCluster.Rd man/ConsensusCluster.internal.Rd man/ConstructNNMat.Rd man/CorNN.Rd man/FilterAnchors.Rd man/FilterCITEmRNA.Rd man/FilterCITEmRNA.internal.Rd man/FilterCODEX.Rd man/FilterCODEX.internal.Rd man/FindAnchorPairs.Rd man/FindIntegrationMatrix.Rd man/FindNN.Rd man/FindNNrna.Rd man/FindWeights.Rd man/FitNB.Rd man/GetTransferMatrix.Rd man/GetTransferMatrix.internal.Rd man/GetUmapCITE.Rd man/GetUmapCODEX.Rd man/KnnCODEX.Rd man/L2Norm.Rd man/MapCODEXtoCITE.Rd man/MapCODEXtoCITE.internal.Rd man/ParameterScan.Rd man/ParameterScan.internal.Rd man/PlotClusterCITE.Rd man/PlotClusterCODEXemb.Rd man/PlotExprCITE.Rd man/PlotExprCODEXemb.Rd man/PlotExprCODEXspatial.Rd man/PlotIndexCITE.Rd man/PlotIndexCODEXemb.Rd man/PlotIndexCODEXspatial.Rd man/PlotSpatialNeighbors.Rd man/PlotSpatialRNA.Rd man/PlotUmapNeighbors.Rd man/RunCCA.Rd man/SSE.Rd man/STvEA-package.Rd man/STvEA.data-class.Rd man/ScoreAnchors.Rd man/SetDataCITE.Rd man/SetDataCODEX.Rd man/TransferDataSeurat2.Rd man/TransformDataMatrix.Rd man/clustering_names.Rd man/hello.Rd man/plot_heatmap.Rd
CamaraLab/STvEA documentation built on June 5, 2019, 12:34 a.m.