PlotExprCODEXemb | R Documentation |
Plot expression of a gene or protein in the CODEX UMAP or t-SNE embedding
PlotExprCODEXemb(
stvea_object,
name,
type = "protein",
high_color = "red",
high_color2 = "green",
low_color = "light gray",
pt_size = 0.8
)
stvea_object |
STvEA.data class with CODEX expression and embedding |
name |
gene or protein name to plot |
type |
which type of expression data should be plotted? "RNA" or "protein" |
high_color |
color of high expression on the color ramp |
high_color2 |
color of high expression for the second protein or gene, if provided |
low_color |
color of low/no expression on the color ramp |
pt_size |
ggplot geom_point size |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.