FindIntegrationMatrix: Calculate anchor vectors between reference and query dataset...
In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring
View source: R/seurat_anchor_correction.R
FindIntegrationMatrix R Documentation
Calculate anchor vectors between reference and query dataset
This is matrix B from Methods in Stuart et al.
Description
Calculate anchor vectors between reference and query dataset
This is matrix B from Methods in Stuart et al.
Usage
FindIntegrationMatrix(ref_mat, query_mat, neighbors, anchors, verbose = FALSE)
Arguments
ref_mat
a (cell x feature) protein expression matrix
query_mat
a (cell x feature) protein expression matrix to be corrected
neighbors
a list of neighbors
anchors
a list of anchors (MNN) as from FindAnchorPairs
verbose
...
CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.
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View source: R/seurat_anchor_correction.R
| FindIntegrationMatrix | R Documentation |
Calculate anchor vectors between reference and query dataset This is matrix B from Methods in Stuart et al.
Description
Calculate anchor vectors between reference and query dataset This is matrix B from Methods in Stuart et al.
Usage
FindIntegrationMatrix(ref_mat, query_mat, neighbors, anchors, verbose = FALSE)
Arguments
ref_mat |
a (cell x feature) protein expression matrix |
query_mat |
a (cell x feature) protein expression matrix to be corrected |
neighbors |
a list of neighbors |
anchors |
a list of anchors (MNN) as from FindAnchorPairs |
verbose |
... |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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