PlotExprCITE: Plot expression of a gene or protein in the CITE-seq UMAP or...
In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring

PlotExprCITE

R Documentation

Plot expression of a gene or protein in the CITE-seq UMAP or t-SNE embedding

Plot expression of a gene or protein in the CITE-seq UMAP or t-SNE embedding

PlotExprCITE(
  stvea_object,
  name,
  type = "RNA",
  high_color = "red",
  high_color2 = "green",
  low_color = "light gray",
  pt_size = 0.8
)

`stvea_object`	STvEA.data class with CITE-seq expression and embedding
`name`	gene or protein to plot - can be a character string, index, or vector with up to two names or indices
`type`	which type of expression data should be plotted? "RNA" or "protein"
`high_color`	color of high expression on the color ramp
`high_color2`	color of high expression for second gene or protein, if provided
`low_color`	color of low/no expression on the color ramp
`pt_size`	ggplot geom_point size
`importFrom`	grDevices colorRampPalette