MapCODEXtoCITE | R Documentation |
Wraps MapCODEXtoCITE.internal using STvEA.data class
MapCODEXtoCITE(
stvea_object,
num_chunks,
seed = NULL,
num_cores = 1,
num.cc = NULL,
k.anchor = 20,
k.filter = 100,
k.score = 80,
k.weight = 100
)
stvea_object |
STvEA.data class with CODEX and CITE-seq data |
num_chunks |
number of equal sized chunks to split CODEX dataset into for correction |
seed |
set.seed before randomly sampling chunks of CODEX dataset |
num_cores |
number of cores to use in parallelized correction of CODEX dataset |
num.cc |
number of canonical vectors to calculate. Defaults to number of proteins in common - 1 |
k.anchor |
number of nn used to find anchors via mutual nearest neighbors |
k.filter |
number of nn in original feature space to use for filtering |
k.score |
number of nn to use in shared nearest neighbor scoring |
k.weight |
number of nn in original query feature space to make correction vectors |
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