FitNB: Fits the expression values of one protein with a Negative...
In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring
View source: R/data_processing.R
FitNB R Documentation
Fits the expression values of one protein with a Negative Binomial mixture
Takes matrices and data frames instead of STvEA.data class
Description
Fits the expression values of one protein with a Negative Binomial mixture
Takes matrices and data frames instead of STvEA.data class
Usage
FitNB(protein_expr, maxit = 500, factr = 1e-09, optim_init = NULL)
Arguments
protein_expr
Raw CITE-seq protein data for one protein
maxit
maximum number of iterations for optim function
factr
accuracty of optim function
optim_init
optional initialization parameters for the optim function
if NULL, starts at two default parameter sets and picks the better one
CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.
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View source: R/data_processing.R
| FitNB | R Documentation |
Fits the expression values of one protein with a Negative Binomial mixture Takes matrices and data frames instead of STvEA.data class
Description
Fits the expression values of one protein with a Negative Binomial mixture Takes matrices and data frames instead of STvEA.data class
Usage
FitNB(protein_expr, maxit = 500, factr = 1e-09, optim_init = NULL)
Arguments
protein_expr |
Raw CITE-seq protein data for one protein |
maxit |
maximum number of iterations for optim function |
factr |
accuracty of optim function |
optim_init |
optional initialization parameters for the optim function if NULL, starts at two default parameter sets and picks the better one |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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