FilterCITEmRNA.internal: Filter CITE-seq mRNA data based on number of transcripts per...

In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring

Filter CITE-seq mRNA data based on number of transcripts per cell and the number of cells each gene is expressed in Takes matrices and data frames instead of STvEA.data class

Description

Filter CITE-seq mRNA data based on number of transcripts per cell and the number of cells each gene is expressed in Takes matrices and data frames instead of STvEA.data class

Usage

FilterCITEmRNA.internal(
  cite_mRNA,
  min_transcripts = 1200,
  min_cells_per_gene = 30
)

Arguments

cite_mRNA	a (cell x gene) matrix of CITE-seq mRNA data
min_transcripts	minimum number of transcripts to keep cell
min_cells_per_gene	minimum number of cells a gene must be expressed in to be kept

CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.