View source: R/feature_scores.R
AdjScoreClustersCODEX | R Documentation |
Use the Adjacency Score to evaluate colocaliztion of all pairs of CODEX clusters in CODEX spatial dimensions. Calls Adjacency Score with c=0 to use hypergeometric null distribution speed up for mutually exclusive binary features.
AdjScoreClustersCODEX(stvea_object, k, num_cores = 1)
stvea_object |
STvEA.data class object containing CODEX cluster assignments and CODEX spatial coordinates |
k |
number of nearest neighbors to create graph from CODEX spatial information |
num_cores |
integer specifying the number of cores to be used in the computation. By default only one core is used. On Windows, this must be set to 1. |
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