SetDataCITE | R Documentation |
Set CITE-seq data in STvEA.data object
SetDataCITE(
cite_mRNA,
cite_protein,
cite_mRNA_norm = NULL,
cite_latent = NULL,
stvea_object = NULL
)
cite_mRNA |
Raw count data for CITE-seq mRNA (cell x gene) |
cite_protein |
Raw expression data for CITE-seq proteins (cell x protein) |
cite_mRNA_norm |
(optional) Normalized and scaled CITE-seq mRNA count data. (cell x gene) If not provided, raw count data is divided by total per cell, then log transformed. |
cite_latent |
(optional) Low dimensional latent space for CITE-seq mRNA (cell x dim) |
stvea_object |
(optional) Pre-existing STvEA.data object to load data into. If not provided, a new object is created. |
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