SetDataCITE: Set CITE-seq data in STvEA.data object

View source: R/objects.R

SetDataCITER Documentation

Set CITE-seq data in STvEA.data object

Description

Set CITE-seq data in STvEA.data object

Usage

SetDataCITE(
  cite_mRNA,
  cite_protein,
  cite_mRNA_norm = NULL,
  cite_latent = NULL,
  stvea_object = NULL
)

Arguments

cite_mRNA

Raw count data for CITE-seq mRNA (cell x gene)

cite_protein

Raw expression data for CITE-seq proteins (cell x protein)

cite_mRNA_norm

(optional) Normalized and scaled CITE-seq mRNA count data. (cell x gene) If not provided, raw count data is divided by total per cell, then log transformed.

cite_latent

(optional) Low dimensional latent space for CITE-seq mRNA (cell x dim)

stvea_object

(optional) Pre-existing STvEA.data object to load data into. If not provided, a new object is created.


CamaraLab/STvEA documentation built on March 27, 2024, 8:58 a.m.