TransferDataSeurat2: Transfer data from a Seurat object to STvEA.data object

In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring

Transfer data from a Seurat object to STvEA.data object

Description

Transfer data from a Seurat object to STvEA.data object

Usage

TransferDataSeurat2(
  seurat_object,
  embedding_reduction = NULL,
  latent_reduction = NULL,
  latent_dims = 20
)

Arguments

seurat_object	Seurat class object
embedding_reduction	(optional) name of the slot holding the dimension reduction embedding used for visualization. Examples: "umap", "tsne"
latent_reduction	(optional) name of the lot holding the dimension reduction to be used for the CITE-seq mRNA latent space. Examples: "pca"
latent_dims	number of dimensions to use for the latent space, not used if latent_reduction is not defined

Value

STvEA.data class object

CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.