PlotIndexCODEXemb: Plot location of a CODEX cell in the CODEX UMAP or t-SNE...
In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring
PlotIndexCODEXemb R Documentation
Plot location of a CODEX cell in the CODEX UMAP or t-SNE embedding
Description
Plot location of a CODEX cell in the CODEX UMAP or t-SNE embedding
Usage
PlotIndexCODEXemb(
stvea_object,
index,
high_color = "red",
low_color = "gray",
pt_size = 0.8
)
Arguments
stvea_object
STvEA.data class with CODEX embedding
index
index of CODEX cell to plot
high_color
color of cell of interest
low_color
color of all other cells
pt_size
ggplot geom_point size
CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.
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| PlotIndexCODEXemb | R Documentation |
Plot location of a CODEX cell in the CODEX UMAP or t-SNE embedding
Description
Plot location of a CODEX cell in the CODEX UMAP or t-SNE embedding
Usage
PlotIndexCODEXemb(
stvea_object,
index,
high_color = "red",
low_color = "gray",
pt_size = 0.8
)
Arguments
stvea_object |
STvEA.data class with CODEX embedding |
index |
index of CODEX cell to plot |
high_color |
color of cell of interest |
low_color |
color of all other cells |
pt_size |
ggplot geom_point size |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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