SetDataCODEX: Set CODEX data in STvEA.data object

In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring

Set CODEX data in STvEA.data object

Description

Set CODEX data in STvEA.data object

Usage

SetDataCODEX(
  codex_protein,
  codex_blanks,
  codex_size,
  codex_spatial = NULL,
  stvea_object = NULL
)

Arguments

codex_protein	Segmented and spillover corrected CODEX protein expression (cell x protein)
codex_blanks	Segmented and spillover corrected CODEX blank channel expression (cell x blank channel)
codex_size	Size of each CODEX cell (vector)
codex_spatial	(optional) xyz coordinates of each CODEX cell (cell x 3 coordinates)
stvea_object	(optional) Pre-existing STvEA.data object to load data into. If not provided, a new object is created.

CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.