View source: R/seurat_anchor_correction.R
ScoreAnchors | R Documentation |
Score anchors between 0 and 1 based on shared nearest neighbors
ScoreAnchors(
neighbors,
anchors,
num_cells_ref,
num_cells_query,
k.score = 30,
verbose = FALSE
)
neighbors |
list of neighbors in CCA space as output by FindNN |
anchors |
list of anchors as output by FindAnchorPairs or FilterAnchors |
num_cells_ref |
total number of cells in dataset1 |
num_cells_query |
total number of cells in dataset2 |
k.score |
number of nn to use in shared nearest neighbor scoring |
verbose |
... |
a matrix where each row is an anchor pair of cell indices with its score
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