ScoreAnchors: Score anchors between 0 and 1 based on shared nearest...

In CamaraLab/STvEA: Spatially-resolved Transcriptomics via Epitope Anchoring

Score anchors between 0 and 1 based on shared nearest neighbors

Description

Score anchors between 0 and 1 based on shared nearest neighbors

Usage

ScoreAnchors(
  neighbors,
  anchors,
  num_cells_ref,
  num_cells_query,
  k.score = 30,
  verbose = FALSE
)

Arguments

neighbors	list of neighbors in CCA space as output by FindNN
anchors	list of anchors as output by FindAnchorPairs or FilterAnchors
num_cells_ref	total number of cells in dataset1
num_cells_query	total number of cells in dataset2
k.score	number of nn to use in shared nearest neighbor scoring
verbose	...

Value

a matrix where each row is an anchor pair of cell indices with its score

CamaraLab/STvEA documentation built on April 2, 2024, 6:07 a.m.