Description Usage Arguments Examples
View source: R/annotate_VCF_functions.R
Adds DBS mutation categories to a VCF containing SNVs. N.B. The VCF must be ordered by sample, CHROM and position for this function to work.
1 | add_DBS_cats_ToVCF(vcf = NULL, DBS_mutations_only = NA)
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DBS_mutations_only |
Logical, TRUE if all lines in input VCF correspond to double base substitutions, FALSE if it contains other SNVs and/or Indels. |
input |
Input VCF to which DBS mutation categories are to be added. |
1 | vcf <- add_DBS_cats_ToVCF(input = vcf, DBS_mutations_only = FALSE)
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