plotStrandBias96types: plotStrandBias96types

In FunGeST/Palimpsest: Package

Description

Function to calculate and plot the transcriptional strand bias over the 96 mutation types

Usage

plotStrandBias96types(
  vcf,
  mutcat3.col = "mutcat3",
  strand.ts.col = "strand.ts",
  plot.file = NULL
)

Arguments

vcf	data frame containing the mutations
mutcat3.col	Mutation categories column name in vcf
strand.ts.col	Name of column containing indicating whether mutations are on the transcribed or untranscribed strand
plot.file	File to which the plot should be saved (if left NULL, plot will be sent directly to the active window)

FunGeST/Palimpsest documentation built on June 10, 2021, 6:35 p.m.