order_vcf: order_vcf
In FunGeST/Palimpsest: Package
View source: R/annotate_VCF_functions.R
order_vcf R Documentation
order_vcf
Description
Orders a VCF by Sample name, then genomic position within each sample and project (if project argument given).
Usage
order_vcf(vcf, Project_col = NA)
Arguments
vcf
The VCF to be ordered.
Project_col
Name of the Project column in the VCF (if any) (e.g. may contain "ICGC"). If a value is given, the samples are sorted by project first, then sample etc..
Examples
vcf <- order_vcf(vcf, Project_col = "Project")
FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.
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View source: R/annotate_VCF_functions.R
| order_vcf | R Documentation |
order_vcf
Description
Orders a VCF by Sample name, then genomic position within each sample and project (if project argument given).
Usage
order_vcf(vcf, Project_col = NA)
Arguments
vcf |
The VCF to be ordered. |
Project_col |
Name of the Project column in the VCF (if any) (e.g. may contain "ICGC"). If a value is given, the samples are sorted by project first, then sample etc.. |
Examples
vcf <- order_vcf(vcf, Project_col = "Project")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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