View source: R/palimpsest_plotting.R
Function to represent the natural histories of tumors
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vcf |
Annotated vcf file for mutations |
sv.vcf |
Annotated vcf file for SVs |
cna_data |
Data frame with Copy Number Alteration Information |
point.mut.time |
Duplication timing estimated from point mutations |
clonsig |
Matrix giving the proportion of clonal mutations attributed to each signature |
subsig |
Matrix giving the proportion of subclonal mutations attributed to each signature |
msigcol |
Color codes for mutational signatures |
msigcol.sv |
Color codes for SV signatures |
spacechar |
Space for characters in the legends |
ystep |
Step between annotation lines |
resdir |
Results directory. |
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