palimpsest_addMutationContextToVR: palimpsest_addMutationContextToVR
In FunGeST/Palimpsest: Package
palimpsest_addMutationContextToVR R Documentation
palimpsest_addMutationContextToVR
Description
Function used within annotate_VCF to add mutation context to SBS mutations.
Usage
palimpsest_addMutationContextToVR(
vr = NULL,
ref_genome = NULL,
k = 3,
check.strand = FALSE,
num_of_DELs = NULL
)
Value
vcf
Examples
vr3 <- palimpsest_addMutationContextToVR(vr = vr, ref_genome = ref_genome, k = 3, num_of_DELs = delet_this)
FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.
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| palimpsest_addMutationContextToVR | R Documentation |
palimpsest_addMutationContextToVR
Description
Function used within annotate_VCF to add mutation context to SBS mutations.
Usage
palimpsest_addMutationContextToVR(
vr = NULL,
ref_genome = NULL,
k = 3,
check.strand = FALSE,
num_of_DELs = NULL
)
Value
vcf
Examples
vr3 <- palimpsest_addMutationContextToVR(vr = vr, ref_genome = ref_genome, k = 3, num_of_DELs = delet_this)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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