indel_category_correct: indel_category_correct
In FunGeST/Palimpsest: Package
View source: R/annotate_VCF_functions.R
indel_category_correct R Documentation
indel_category_correct
Description
Corrects Indel category output from PCAWG7-data-preparation-version-1.5 in the add_ID_cats_ToVCF function. Palimpsest uses the COSMIC indel categories (taken from the Sanger Institute's SigProfiler tool), whereas the PCAWG7-data-preparation-version-1.5 (from the Broad institute) uses slightly different categories.
Usage
indel_category_correct(input = NULL)
Arguments
input
VCF of indel mutations
Examples
vcf_ID <- indel_category_correct(input = vcf)
FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.
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View source: R/annotate_VCF_functions.R
| indel_category_correct | R Documentation |
indel_category_correct
Description
Corrects Indel category output from PCAWG7-data-preparation-version-1.5 in the add_ID_cats_ToVCF function. Palimpsest uses the COSMIC indel categories (taken from the Sanger Institute's SigProfiler tool), whereas the PCAWG7-data-preparation-version-1.5 (from the Broad institute) uses slightly different categories.
Usage
indel_category_correct(input = NULL)
Arguments
input |
VCF of indel mutations |
Examples
vcf_ID <- indel_category_correct(input = vcf)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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