Description Usage Arguments Examples
View source: R/annotate_VCF_functions.R
Corrects Indel category output from PCAWG7-data-preparation-version-1.5 in the add_ID_cats_ToVCF function. Palimpsest uses the COSMIC indel categories (taken from the Sanger Institute's SigProfiler tool), whereas the PCAWG7-data-preparation-version-1.5 (from the Broad institute) uses slightly different categories.
1 | indel_category_correct(input = NULL)
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input |
VCF of indel mutations |
1 | vcf_ID <- indel_category_correct(input = vcf)
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