makeMutypeMatFromVcf: makeMutypeMatFromVcf
In FunGeST/Palimpsest: Package
Description
Function to create a matrix in mutation type x sample format with either counts or proportions
Usage
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makeMutypeMatFromVcf(
vcf,
sample.col = "Sample",
mutcat.col = "SBS_cat3",
mutypes = c("CA", "CG", "CT", "TA", "TC", "TG"),
proportion = TRUE
)
Arguments
vcf
vcf data frame containing the mutations/SVs
sample.col
sample.col
mutcat.col
mutcat.col
mutypes
mutypes
proportion
proportion
FunGeST/Palimpsest documentation built on June 10, 2021, 6:35 p.m.
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Description
Function to create a matrix in mutation type x sample format with either counts or proportions
Usage
1 2 3 4 5 6 7 | makeMutypeMatFromVcf(
vcf,
sample.col = "Sample",
mutcat.col = "SBS_cat3",
mutypes = c("CA", "CG", "CT", "TA", "TC", "TG"),
proportion = TRUE
)
|
Arguments
vcf |
vcf data frame containing the mutations/SVs |
sample.col |
sample.col |
mutcat.col |
mutcat.col |
mutypes |
mutypes |
proportion |
proportion |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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