palimpsest_dfPosXSegm: palimpsest_dfPosXSegm

In FunGeST/Palimpsest: Package

Description

Function to annotate positions in a data frame (dfPos) using segments in another data frame (dfSegm)

Usage

palimpsest_dfPosXSegm(
  dfPos = NULL,
  dfPos.chrom.col = "chrom",
  dfPos.pos.col = "pos",
  dfSegm = NULL,
  dfSegm.chrom.col = "chrom",
  dfSegm.start.col = "start",
  dfSegm.end.col = "end",
  colsToAdd = NULL,
  namesColsToAdd = NULL,
  multseg = c(NA, "first", "all")[1]
)

Arguments

dfPos	Data frame with positions to annotate
dfPos.chrom.col	Chromosome column in dfPos
dfPos.pos.col	Position column in dfPos
dfSegm	Data frame with segments to use for annotating dfPos
dfSegm.chrom.col	Chromosome column in dfSegm
dfSegm.start.col	Start position column in dfSegm
dfSegm.end.col	End position column in dfSegm
colsToAdd	Names of columns in dfSegm that should be used to annotate dfPos
namesColsToAdd	Column names to give in the columns added to dfPos
multseg	required

FunGeST/Palimpsest documentation built on June 10, 2021, 6:35 p.m.