cnaCCF_annot: cnaCCF_annot
In FunGeST/Palimpsest: Package
Description
This function allows to annotate the input mutation data with clonality information (Cancer Cell Fraction- CCF) based on the Copy Number information provided
Usage
1
2
3
4
5
6
cnaCCF_annot(
vcf = NULL,
annot_data = NULL,
cna_data = NULL,
CCF_boundary = 0.95
)
Arguments
vcf
vcf data frame containing somatic mutations
annot_data
Annotation file with Gender information and Tumor Purity for each sample
cna_data
Data frame with Copy Number Alteration Information
CCF_boundary
percentage boundary threshold for clonal mutations
FunGeST/Palimpsest documentation built on June 10, 2021, 6:35 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This function allows to annotate the input mutation data with clonality information (Cancer Cell Fraction- CCF) based on the Copy Number information provided
Usage
1 2 3 4 5 6 | cnaCCF_annot(
vcf = NULL,
annot_data = NULL,
cna_data = NULL,
CCF_boundary = 0.95
)
|
Arguments
vcf |
vcf data frame containing somatic mutations |
annot_data |
Annotation file with Gender information and Tumor Purity for each sample |
cna_data |
Data frame with Copy Number Alteration Information |
CCF_boundary |
percentage boundary threshold for clonal mutations |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.