cnaCCF_annot: cnaCCF_annot
In FunGeST/Palimpsest: Package
cnaCCF_annot R Documentation
cnaCCF_annot
Description
This function allows to annotate the input mutation data with clonality information (Cancer Cell Fraction- CCF) based on the Copy Number information provided
Usage
cnaCCF_annot(
vcf = NULL,
annot_data = NULL,
cna_data = NULL,
CCF_boundary = 0.95
)
Arguments
vcf
vcf data frame containing somatic mutations
annot_data
Annotation file with Gender information and Tumor Purity for each sample
cna_data
Data frame with Copy Number Alteration Information
CCF_boundary
percentage boundary threshold for clonal mutations
FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.
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| cnaCCF_annot | R Documentation |
cnaCCF_annot
Description
This function allows to annotate the input mutation data with clonality information (Cancer Cell Fraction- CCF) based on the Copy Number information provided
Usage
cnaCCF_annot(
vcf = NULL,
annot_data = NULL,
cna_data = NULL,
CCF_boundary = 0.95
)
Arguments
vcf |
vcf data frame containing somatic mutations |
annot_data |
Annotation file with Gender information and Tumor Purity for each sample |
cna_data |
Data frame with Copy Number Alteration Information |
CCF_boundary |
percentage boundary threshold for clonal mutations |
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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