extract_dbs_from_vcf: extract_dbs_from_vcf
In FunGeST/Palimpsest: Package
View source: R/annotate_VCF_functions.R
extract_dbs_from_vcf R Documentation
extract_dbs_from_vcf
Description
returns lines of a VCF corresponding to DBS mutations. The VCF must be ordered by sample, CHROM and position for this function to work (can be performed by the "order_vcf()" function.
Usage
extract_dbs_from_vcf(vcf = NULL)
Arguments
vcf
The input VCF from which DBS mutations are to be extracted
Examples
vcf_dbs <- extract_dbs_from_vcf(vcf = vcf)
FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.
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View source: R/annotate_VCF_functions.R
| extract_dbs_from_vcf | R Documentation |
extract_dbs_from_vcf
Description
returns lines of a VCF corresponding to DBS mutations. The VCF must be ordered by sample, CHROM and position for this function to work (can be performed by the "order_vcf()" function.
Usage
extract_dbs_from_vcf(vcf = NULL)
Arguments
vcf |
The input VCF from which DBS mutations are to be extracted |
Examples
vcf_dbs <- extract_dbs_from_vcf(vcf = vcf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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