deconvolution_compare: deconvolution_compare
In FunGeST/Palimpsest: Package
Description
Usage
Arguments
Examples
View source: R/palimpsest_deconvolution.R
Description
Function to calculate cosine similarity scores between two sets of mutational signatures (e.g. SBS COSMIC signatures vs Palimpsest de novo signatures).
Usage
1
deconvolution_compare(new_signatures, COSMIC_Signatures)
Arguments
new_signatures
Data frame of de novo extracted mutational signatures
COSMIC_Signatures
Data frame of reference mutational signatures (The reference SBS_cosmic, DBS_cosmic & ID_cosmic matrices are taken from Alexandrov et al. (2018)).
Examples
1
SBS_cosine_similarities <- deconvolution_compare(SBS_denovo_sigs,SBS_cosmic)
FunGeST/Palimpsest documentation built on June 10, 2021, 6:35 p.m.
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Description Usage Arguments Examples
View source: R/palimpsest_deconvolution.R
Description
Function to calculate cosine similarity scores between two sets of mutational signatures (e.g. SBS COSMIC signatures vs Palimpsest de novo signatures).
Usage
1 | deconvolution_compare(new_signatures, COSMIC_Signatures)
|
Arguments
new_signatures |
Data frame of de novo extracted mutational signatures |
COSMIC_Signatures |
Data frame of reference mutational signatures (The reference SBS_cosmic, DBS_cosmic & ID_cosmic matrices are taken from Alexandrov et al. (2018)). |
Examples
1 | SBS_cosine_similarities <- deconvolution_compare(SBS_denovo_sigs,SBS_cosmic)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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