deconvolution_compare: deconvolution_compare
In FunGeST/Palimpsest: Package
View source: R/palimpsest_deconvolution.R
deconvolution_compare R Documentation
deconvolution_compare
Description
Function to calculate cosine similarity scores between two sets of mutational signatures (e.g. SBS COSMIC signatures vs Palimpsest de novo signatures).
Usage
deconvolution_compare(new_signatures, COSMIC_Signatures)
Arguments
new_signatures
Data frame of de novo extracted mutational signatures
COSMIC_Signatures
Data frame of reference mutational signatures (The reference SBS_cosmic, DBS_cosmic & ID_cosmic matrices are taken from Alexandrov et al. (2018)).
Examples
SBS_cosine_similarities <- deconvolution_compare(SBS_denovo_sigs,SBS_cosmic)
FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.
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View source: R/palimpsest_deconvolution.R
| deconvolution_compare | R Documentation |
deconvolution_compare
Description
Function to calculate cosine similarity scores between two sets of mutational signatures (e.g. SBS COSMIC signatures vs Palimpsest de novo signatures).
Usage
deconvolution_compare(new_signatures, COSMIC_Signatures)
Arguments
new_signatures |
Data frame of de novo extracted mutational signatures |
COSMIC_Signatures |
Data frame of reference mutational signatures (The reference SBS_cosmic, DBS_cosmic & ID_cosmic matrices are taken from Alexandrov et al. (2018)). |
Examples
SBS_cosine_similarities <- deconvolution_compare(SBS_denovo_sigs,SBS_cosmic)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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