palimpsest_Fireworks: palimpsest_Fireworks

In FunGeST/Palimpsest: Package

palimpsest_Fireworks

Description

Function to plot fireworks plotfor variant allele fractions

Usage

palimpsest_Fireworks(
  vcf = NULL,
  CHROM.col = "CHROM",
  POS.col = "POS",
  VAF.col = "Tumor_Varprop",
  LogR.col = "LogR",
  nPurity.col = "nPurity"
)

Arguments

vcf	vcf data frame containing the mutations
CHROM.col	Chromosome column name in vcf.
POS.col	Position column name in vcf.
VAF.col	Variant Allele Fraction information column name in vcf.
LogR.col	LogR information column name in vcf.
nPurity.col	Tumor purity column name in vcf.

FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.