plotStrandBias6types: plotStrandBias6types

In FunGeST/Palimpsest: Package

plotStrandBias6types

Description

Function to calculate and plot the transcriptional strand bias over the 6 substitution types

Usage

plotStrandBias6types(
  vcf,
  substype.col = "substype",
  strand.ts.col = "strand.ts",
  plot.file = NULL
)

Arguments

vcf	vcf data frame containing the mutations
substype.col	Substitution types data frame containing the mutations
strand.ts.col	Name of column containing indicating whether mutations are on the transcribed or untranscribed strand
plot.file	File to which the plot should be saved (if left NULL, plot will be sent directly to the active window)

FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.