palimpsest_CCFplot: palimpsest_CCFplot

In FunGeST/Palimpsest: Package

palimpsest_CCFplot

Description

Function to plot Variant Allele Fraction and CCF distribution in a Sample

Usage

palimpsest_CCFplot(
  vcf = NULL,
  CHROM.col = "CHROM",
  VAF.col = "Tumor_Varprop",
  clonality.col = "CCF_Clonality"
)

Arguments

vcf	vcf data frame containing the mutations
CHROM.col	Chromosome column name in vcf.
VAF.col	Variant Allele Fraction information column name in vcf.
clonality.col	Clonaility information column name in vcf.

FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.