count_triplets: count_triplets
In FunGeST/Palimpsest: Package
View source: R/palimpsest_input.R
count_triplets R Documentation
count_triplets
Description
Counts the number of DBS mutations that are in fact triple base substituions. Used inside "palimpsest_input2", not designed to be used outside this function.
Usage
count_triplets(vcf, ordering, mutypes)
Arguments
vcf
The input vcf file.
ordering
the ordering of samples from palimpsest_input2 function.
mutypes
The DBS mutypes from palimpsest_input2 function.
Examples
trip_nums <- count_triplets(vcf, ordering, mutypes)
FunGeST/Palimpsest documentation built on June 2, 2024, 4:21 a.m.
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View source: R/palimpsest_input.R
| count_triplets | R Documentation |
count_triplets
Description
Counts the number of DBS mutations that are in fact triple base substituions. Used inside "palimpsest_input2", not designed to be used outside this function.
Usage
count_triplets(vcf, ordering, mutypes)
Arguments
vcf |
The input vcf file. |
ordering |
the ordering of samples from palimpsest_input2 function. |
mutypes |
The DBS mutypes from palimpsest_input2 function. |
Examples
trip_nums <- count_triplets(vcf, ordering, mutypes)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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