API for Guan06/mina
Microbial community dIversity and Network Analysis

Global functions
.adj	Man page Source code
.adj<-	Man page
.adj<-,mina-method	Man page
.dmr	Man page
.dmr,mina-method	Man page
.dmr<-	Man page
.dmr<-,mina-method	Man page
adj	Man page
adj,matrix,ANY-method	Man page
adj,matrix,character-method	Man page
adj,mina,ANY-method	Man page
adj,mina,character-method	Man page
adj_method_list	Man page
adj_sig	Man page Source code
adj_sig<-	Man page
adj_sig<-,mina-method	Man page
ap_clusters	Source code
ap_exemplars	Source code
bs_pm	Man page
bs_pm,mina,ANY-method	Man page
bs_pm,mina,character-method	Man page
check_mina	Man page Source code
check_mina_de	Man page Source code
check_mina_qu	Man page Source code
cls	Man page Source code
cls<-	Man page
cls<-,mina-method	Man page
cls_tab	Man page Source code
cls_tab<-	Man page
cls_tab<-,mina-method	Man page
com_dis	Man page
com_dis,matrix,ANY-method	Man page
com_dis,matrix,character-method	Man page
com_dis,mina,ANY-method	Man page
com_dis,mina,character-method	Man page
com_dis_list	Man page
com_plot	Man page
com_plot,mina,ANY-method	Man page
com_plot,mina,character-method	Man page
com_r2	Man page
com_r2,mina,ANY-method	Man page
com_r2,mina,character-method	Man page
cp_cor	Man page Source code
data-hmp	Man page
data-maize	Man page
des	Man page
des,mina-method	Man page
des<-	Man page
des<-,mina-method	Man page
dis	Man page
dis,mina-method	Man page
dis<-	Man page
dis<-,mina-method	Man page
dis_bs	Man page Source code
dis_bs<-	Man page
dis_bs<-,mina-method	Man page
dis_pm	Man page Source code
dis_pm<-	Man page
dis_pm<-,mina-method	Man page
dis_stat	Man page Source code
dis_stat<-	Man page
dis_stat<-,mina-method	Man page
dmr	Man page
dmr,matrix-method	Man page
dmr,mina-method	Man page
filter_mat	Man page Source code
fit_tabs	Man page
fit_tabs,mina-method	Man page
get_contrast	Man page Source code
get_contrast_grp	Man page Source code
get_dis_df	Man page Source code
get_ja	Man page Source code
get_ja0	Man page Source code
get_ja0_grp	Man page Source code
get_ja_grp	Man page Source code
get_net_cls_tab	Man page
get_net_cls_tab,matrix,data.frame-method	Man page
get_r2	Man page
get_r2,matrix,ANY,ANY-method	Man page
get_r2,matrix,data.frame,ANY-method	Man page
get_r2,matrix,data.frame,character-method	Man page
get_rep	Man page
get_rep,matrix-method	Man page
get_rep,mina-method	Man page
get_spectra	Man page Source code
get_stat	Man page Source code
hmp	Man page
hmp_des	Man page
hmp_otu	Man page
maize	Man page
maize_asv	Man page
maize_asv2	Man page
maize_des	Man page
maize_des2	Man page
mat_or_NULL-class	Man page
mina-class	Man page
multi	Man page
multi,mina-method	Man page
multi<-	Man page
multi<-,mina-method	Man page
net_cls	Man page
net_cls,matrix,ANY-method	Man page
net_cls,matrix,character-method	Man page
net_cls,mina,ANY-method	Man page
net_cls,mina,character-method	Man page
net_cls_tab	Man page
net_cls_tab,mina-method	Man page
net_dis	Man page
net_dis,mina,ANY-method	Man page
net_dis,mina,character-method	Man page
net_dis_indi	Man page
net_dis_indi,character,ANY-method	Man page
net_dis_indi,character,character-method	Man page
net_dis_pcoa	Man page
net_dis_pcoa,character-method	Man page
net_dis_plot	Man page
net_dis_plot,mina-method	Man page
net_grp_cmp	Man page
net_grp_cmp,character-method	Man page
net_node_cmp	Man page
net_node_cmp,character,character-method	Man page
norm	Man page
norm,mina-method	Man page
norm<-	Man page
norm<-,mina-method	Man page
norm_by_raref	Man page Source code
norm_by_total	Man page Source code
norm_tab	Man page
norm_tab,matrix,character-method	Man page
norm_tab,mina,ANY-method	Man page
norm_tab,mina,character-method	Man page
norm_tab_method_list	Man page
pcoa_plot	Man page
pcoa_plot,list,data.frame,character-method	Man page
perm	Man page
perm,mina-method	Man page
perm<-	Man page
perm<-,mina-method	Man page
rarefaction_subsample	Man page Source code
re_format_AP	Man page Source code
re_format_MCL	Man page Source code
sim_par	Man page Source code
sparcc	Man page Source code
tab	Man page
tab,mina-method	Man page
tab<-	Man page
tab<-,mina-method	Man page
tina	Man page
tina,matrix-method	Man page