validate.BamDataFile: Validates a BAM (or SAM) file

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Validates a BAM (or SAM) file.

Usage

## S3 method for class 'BamDataFile'
validate(this, method=c("picard"), ..., verbose=FALSE)

Arguments

method	A character string specifying which validation method to use.
...	Additional arguments passed to the internal validation method.
verbose	See Verbose.

Value

Returns (invisibly) what the internal validation method returns, or throws an exception if an error is detected.

Author(s)

Henrik Bengtsson

See Also

Internally picardValidateSamFile() is used.

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.