Files in MRCIEU/TwoSampleMR

Two Sample MR Functions and Interface to MR Base Database

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md LICENSE.md NEWS.md R/TwoSampleMR-package.R R/add_metadata.r R/add_rsq.r R/backward_compatibility.R R/enrichment.R R/eve.R R/forest_plot.R R/forest_plot2.R R/forest_plot_1-to-many.R R/format_mr_results2.R R/globals.R R/harmonise.R R/heterogeneity.R R/instruments.R R/knit.R R/ld.R R/ldsc.r R/leaveoneout.R R/make_dat.R R/moe.R R/mr.R R/mr_mode.R R/multivariable_mr.R R/other_formats.R R/query.R R/read_data.R R/rucker.R R/scatterplot.R R/singlesnp.R R/steiger.R R/steiger_filtering.R R/transform.R R/utils-pipe.R R/zzz.R README.Rmd README.md index.md inst/reports/mr_report.Rmd inst/sandpit/api_alive.r inst/sandpit/api_comparisons.R inst/sandpit/example.R inst/sandpit/forest_plots.R inst/sandpit/harmonise.R inst/sandpit/mr_test.R inst/sandpit/multivariable_mr.R inst/sandpit/multivariable_mr.rmd inst/sandpit/mysql.R inst/sandpit/plot_tests.R inst/sandpit/sorting_gwas_catalog.R inst/sandpit/test_indels.r inst/sandpit/test_moe.R inst/sandpit/test_mr_sign.R inst/sandpit/test_mrinput.r inst/sandpit/test_rucker.R inst/sandpit/test_selection.R inst/sandpit/test_steiger_binary.r inst/sandpit/vignette.rmd inst/sandpit/workflow.R man/Isq.Rd man/TwoSampleMR-package.Rd man/add_metadata.Rd man/add_rsq.Rd man/allele_frequency.Rd man/available_outcomes.Rd man/cleanup_outcome_data.Rd man/clump_data.Rd man/combine_all_mrresults.Rd man/combine_data.Rd man/contingency.Rd man/convert_outcome_to_exposure.Rd man/create_label.Rd man/dat_to_MRInput.Rd man/dat_to_RadialMR.Rd man/default_parameters.Rd man/directionality_test.Rd man/effective_n.Rd man/enrichment.Rd man/enrichment_method_list.Rd man/estimate_trait_sd.Rd man/extract_instruments.Rd man/extract_outcome_data.Rd man/fishers_combined_test.Rd man/forest_plot.Rd man/forest_plot_1_to_many.Rd man/forest_plot_basic.Rd man/forest_plot_basic2.Rd man/format_1_to_many.Rd man/format_aries_mqtl.Rd man/format_d.Rd man/format_data.Rd man/format_gtex_eqtl.Rd man/format_gwas_catalog.Rd man/format_metab_qtls.Rd man/format_mr_results.Rd man/format_proteomic_qtls.Rd man/generate_odds_ratios.Rd man/get_p_from_r2n.Rd man/get_population_allele_frequency.Rd man/get_r_from_bsen.Rd man/get_r_from_lor.Rd man/get_r_from_pn.Rd man/get_se.Rd man/harmonise_data.Rd man/harmonise_ld_dat.Rd man/knit_report.Rd man/ld_matrix.Rd man/ldsc_h2.Rd man/ldsc_h2_internal.Rd man/ldsc_rg.Rd man/ldsc_rg_internal.Rd man/make_dat.Rd man/mr.Rd man/mr_density_plot.Rd man/mr_egger_regression.Rd man/mr_egger_regression_bootstrap.Rd man/mr_forest_plot.Rd man/mr_forest_plot_grouped.Rd man/mr_funnel_plot.Rd man/mr_heterogeneity.Rd man/mr_ivw.Rd man/mr_ivw_fe.Rd man/mr_ivw_mre.Rd man/mr_ivw_radial.Rd man/mr_leaveoneout.Rd man/mr_leaveoneout_plot.Rd man/mr_median.Rd man/mr_meta_fixed.Rd man/mr_meta_fixed_simple.Rd man/mr_meta_random.Rd man/mr_method_list.Rd man/mr_mode.Rd man/mr_moe.Rd man/mr_penalised_weighted_median.Rd man/mr_pleiotropy_test.Rd man/mr_raps.Rd man/mr_report.Rd man/mr_rucker.Rd man/mr_rucker_bootstrap.Rd man/mr_rucker_cooksdistance.Rd man/mr_rucker_jackknife.Rd man/mr_scatter_plot.Rd man/mr_sign.Rd man/mr_simple_median.Rd man/mr_simple_mode.Rd man/mr_simple_mode_nome.Rd man/mr_singlesnp.Rd man/mr_steiger.Rd man/mr_steiger2.Rd man/mr_two_sample_ml.Rd man/mr_uwr.Rd man/mr_wald_ratio.Rd man/mr_weighted_median.Rd man/mr_weighted_mode.Rd man/mr_weighted_mode_nome.Rd man/mr_wrapper.Rd man/mv_basic.Rd man/mv_extract_exposures.Rd man/mv_extract_exposures_local.Rd man/mv_harmonise_data.Rd man/mv_ivw.Rd man/mv_lasso_feature_selection.Rd man/mv_multiple.Rd man/mv_residual.Rd man/mv_subset.Rd man/pipe.Rd man/power_prune.Rd man/read_exposure_data.Rd man/read_outcome_data.Rd man/run_mr_presso.Rd man/run_mrmix.Rd man/simple_cap.Rd man/size.prune.Rd man/sort_1_to_many.Rd man/split_exposure.Rd man/split_outcome.Rd man/standardise_units.Rd man/steiger_filtering.Rd man/steiger_sensitivity.Rd man/subset_on_method.Rd man/trim.Rd man/weighted_median.Rd man/weighted_median_bootstrap.Rd tests/testthat.R tests/testthat/test_add_metadata.r tests/testthat/test_create_test_data.r tests/testthat/test_eve.R tests/testthat/test_format_data.R tests/testthat/test_harmonise.R tests/testthat/test_harmonise_edge_cases.R tests/testthat/test_heterogeneity.R tests/testthat/test_instruments.R tests/testthat/test_ld.R tests/testthat/test_ldsc.R tests/testthat/test_leaveoneout.R tests/testthat/test_mvmr.R tests/testthat/test_mvmr_local.R tests/testthat/test_otherformats.R tests/testthat/test_outcomes.R tests/testthat/test_plots.R tests/testthat/test_rsq.r tests/testthat/test_singlesnp.R tests/testthat/test_steiger.R vignettes/exposure.Rmd vignettes/gwas2020.Rmd vignettes/harmonise.Rmd vignettes/introduction.Rmd vignettes/outcome.Rmd vignettes/perform_mr.Rmd