dot-RNAseq_all_gene: Compares expressions among genes in tumor samples
In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers
.RNAseq_all_gene R Documentation
Compares expressions among genes in tumor samples
Description
This function selects the RNAseq data from TCGA samples, excludes
samples with label of Solid Tissue Normal and ranks the genes by their
mRNA expression.
It should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA()
function.
Usage
.RNAseq_all_gene(df)
Arguments
df
.TCGA_GTEX_RNAseq_sampletype_subset generated
inside .plot_boxgraph_RNAseq_TCGA()
Value
a data frame ranking genes by their mRNA expressions in lung adenocarcinoma
See Also
Other helper function for differential expression analysis:
.RNAratio_calculation(),
.RNAratio_selection(),
.RNAratio_tumortype(),
.RNAseq_ind_gene(),
.RNAseq_tumortype()
Examples
## Not run:
.RNAseq_all_gene(.TCGA_GTEX_RNAseq_sampletype_subset)
## End(Not run)
a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.
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| .RNAseq_all_gene | R Documentation |
Compares expressions among genes in tumor samples
Description
This function selects the RNAseq data from TCGA samples, excludes
samples with label of Solid Tissue Normal and ranks the genes by their
mRNA expression.
It should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA()
function.
Usage
.RNAseq_all_gene(df)
Arguments
df |
|
Value
a data frame ranking genes by their mRNA expressions in lung adenocarcinoma
See Also
Other helper function for differential expression analysis:
.RNAratio_calculation(),
.RNAratio_selection(),
.RNAratio_tumortype(),
.RNAseq_ind_gene(),
.RNAseq_tumortype()
Examples
## Not run: .RNAseq_all_gene(.TCGA_GTEX_RNAseq_sampletype_subset) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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