dot-RNAseq_ind_gene: Analyzes differential gene expression in tumors vs adjacent...

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Analyzes differential gene expression in tumors vs adjacent normal tissues

Description

A helper function selects the RNAseq data of each EIF genes from TCGA tumors and solid tissue normal samples in .TCGA_GTEX_RNAseq_sampletype_subset. It should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA() function.

Usage

.RNAseq_ind_gene(df, gene)

Arguments

df	.TCGA_GTEX_RNAseq_sampletype_subset generated inside .plot_boxgraph_RNAseq_TCGA()
gene	one gene from the input argument of .plot_boxgraph_RNAseq_TCGA()

Value

a data frame of differential gene expression in tumors vs adjacent normal tissues from individual TCGA cancer types

See Also

Other helper function for differential expression analysis: .RNAratio_calculation(), .RNAratio_selection(), .RNAratio_tumortype(), .RNAseq_all_gene(), .RNAseq_tumortype()

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.