dot-violinplot: Violin plots of differential gene expression/ratio in...

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Violin plots of differential gene expression/ratio in primary, metastatic tumors vs adjacent normal tissues

Description

This function should not be used directly, only inside .plot_boxgraph_RNAseq_TCGA() or .plot_boxgraph_RNAratio_TCGA() function.

Side effect: (1) the violin plots on screen and as pdf file to show differential gene expression/ratio in primary, metastatic tumors vs adjacent normal tissues from all combined TCGA cancer types

Usage

.violinplot(df, y.axis.title, y.axis.break, dashline)

Arguments

df	output dataset generated from .RNAseq_tumortype() or .RNAratio_tumortype() function
y.axis.title	the title name for y axis
y.axis.break	the break mark on the y axis
dashline	the position of horizontal reference line

See Also

Other helper function for differential expression plotting: .RNAratio_boxplot(), .RNAseq_boxplot(), .RNAseq_grouped_boxplot()

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.