API for acc-bioinfo/TMBleR
Tumor Mutational Burden Quantification From Gene Panels And WES
| Global functions | |
|---|---|
| .empty_vcf | Source code |
| .fetch_filtered_SNV | Man page Source code |
| .remove_noncoding_SNV | Man page Source code |
| .validate_vcf | Source code |
| COSMIC_hg19_demo | Man page |
| COSMIC_hg38_demo | Man page |
| ExamplePaneldesign | Man page |
| ExampleWESdesign | Man page |
| ExampleWESvcfs | Man page |
| Hellman_SimulatedFM1Panel_WES | Man page |
| HumanTumorSuppressors | Man page |
| TMB_Horizon | Man page |
| TMB_VanAllen | Man page |
| TMBs_SimulatedPanel | Man page |
| TMBs_WES | Man page |
| VanAllen_Clinical | Man page |
| annotateTMB | Man page Source code |
| applyFilters | Man page Source code |
| applySimulatePanel | Man page Source code |
| applyTMB | Man page Source code |
| callFilters | Man page Source code |
| callTMB | Man page Source code |
| compareROC | Man page Source code |
| compareTMBdistribution | Man page Source code |
| containsNucleotidesAlt | Source code |
| containsNucleotidesRef | Source code |
| correlateTMBvalues | Man page Source code |
| filterByVAF | Man page Source code |
| filterCOSMIC | Man page Source code |
| filterTruncatingTumorSuppr | Man page Source code |
| filterVariantType | Man page Source code |
| formatCOSMIC | Man page Source code |
| generateBoxplot | Man page Source code |
| generateROC | Man page Source code |
| inputToTMB | Man page Source code |
| isFloat | Source code |
| isGenotype | Source code |
| isInfo | Source code |
| log | Source code |
| parseInfo | Source code |
| plotTMB | Man page Source code |
| readDesign | Man page Source code |
| readVcfFiles | Man page Source code |
| removeCancerVariants | Man page Source code |
| simulatePanel | Man page Source code |
| vcfs_NoCancer_ForPanel | Man page |
| vcfs_all | Man page |
