ExampleWESvcfs: Dataset containing example vcf from WES
In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES
Description
Usage
Format
Source
Description
Mutations in VCF format from WES sequencing of 4 samples
Usage
1
Format
A list of four elements (corresponding to 4 samples). Each element is a CollapsedVCF object.
- fixed
dataframe with REF, ALT, QUAL, FILTER
- info
dataframe with data in INFO field of VCF
- rowRanges
GRanges object with chromosome, start and end coordinates, strand
- colData
dataframe with sample name
- assays
Reference class object of class "ShallowSimpleListAssays", describing fields in INFO of VCF
- elementMetadata
dataframe
- NAMES
NULL
- metadata
dataframe with metadata of VCF
Source
in house examples of WES vcfs.
acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.
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Description Usage Format Source
Description
Mutations in VCF format from WES sequencing of 4 samples
Usage
1 |
Format
A list of four elements (corresponding to 4 samples). Each element is a CollapsedVCF object.
- fixed
dataframe with REF, ALT, QUAL, FILTER
- info
dataframe with data in INFO field of VCF
- rowRanges
GRanges object with chromosome, start and end coordinates, strand
- colData
dataframe with sample name
- assays
Reference class object of class "ShallowSimpleListAssays", describing fields in INFO of VCF
- elementMetadata
dataframe
- NAMES
NULL
- metadata
dataframe with metadata of VCF
Source
in house examples of WES vcfs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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