vcfs_all: Data to use as input to the applyTMB functions in tests
In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES
Description
Usage
Format
Source
Description
List of lists, , generated by applyFilters or applyInputToTMB, containing
required input to the applyTMB function. Each element of the list corresponds
to a sample and is a list with the following elements: sample, filter,
variants and design.
Usage
1
Format
A data frame with 4 rows and 5 variables
- sample
character, sample identifier
- Filter
character, type of filter, if any, applied on input mutations
- design
GRanges object, regions targeted by the sequencing experiment
(WES or Panel)
- variants
data.frame, describing mutations by chromosome, start and
end coordinates, REF and ALT alleles
Source
generated in house as an example of TMB estimated obtained by WES.
acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.
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Description Usage Format Source
Description
List of lists, , generated by applyFilters or applyInputToTMB, containing required input to the applyTMB function. Each element of the list corresponds to a sample and is a list with the following elements: sample, filter, variants and design.
Usage
1 |
Format
A data frame with 4 rows and 5 variables
- sample
character, sample identifier
- Filter
character, type of filter, if any, applied on input mutations
- design
GRanges object, regions targeted by the sequencing experiment (WES or Panel)
- variants
data.frame, describing mutations by chromosome, start and end coordinates, REF and ALT alleles
Source
generated in house as an example of TMB estimated obtained by WES.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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