inputToTMB: Provide a suitable input to the callTMB function for TMB...
In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES
Description
Usage
Arguments
Value
Author(s)
Description
This function reads in input an object containing mutations and generates in
output a list with the following elements: filter description,
an object with sequencing design and an object containing variants.
Usage
1
inputToTMB(vcf, design, filter)
Arguments
vcf
a CollapsedVCF object containing variants
design
a GRanges object containing WES or panel sequencing
design
filter
a character string describing the type of filter
previously applied to input variants
Value
Returns a list with filter description, a design object
and an object containing variants, as required in input by the
callTMB function
Author(s)
Laura Fancello
acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.
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Description Usage Arguments Value Author(s)
Description
This function reads in input an object containing mutations and generates in output a list with the following elements: filter description, an object with sequencing design and an object containing variants.
Usage
1 | inputToTMB(vcf, design, filter)
|
Arguments
vcf |
a |
design |
a |
filter |
a |
Value
Returns a list with filter description, a design object
and an object containing variants, as required in input by the
callTMB function
Author(s)
Laura Fancello
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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