filterByVAF: Filter variants according to variant allele frequency
In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES
Description
Usage
Arguments
Value
Author(s)
Description
This function removes from the input variants those with variant allele
frequency (VAF) inferior to the cutoff value provided. The AF field is
required in the input vcf file to apply this function.
Usage
1
filterByVAF(vcf, vaf.cutoff)
Arguments
vcf
a CollapsedVCF object containing somatic variants
vaf.cutoff
minimum value of variant allele frequency accepted
Value
Returns a CollapsedVCF object containing only variants with
variant allele frequency above the cutoff
Author(s)
Laura Fancello
acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.
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Description Usage Arguments Value Author(s)
Description
This function removes from the input variants those with variant allele frequency (VAF) inferior to the cutoff value provided. The AF field is required in the input vcf file to apply this function.
Usage
1 | filterByVAF(vcf, vaf.cutoff)
|
Arguments
vcf |
a |
vaf.cutoff |
minimum value of variant allele frequency accepted |
Value
Returns a CollapsedVCF object containing only variants with
variant allele frequency above the cutoff
Author(s)
Laura Fancello
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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