VanAllen_Clinical: Dataset containing tumor mutational burden and clinical data...

In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES

Description

Dataset from Van Allen EM et al., Science 2015 containing the detailed clinical and genome characteristics of the indivitual patients enrolled into the study. The datase includes wherether the patients were classified as either responder or non-responder.

Usage

VanAllen_Clinical

Format

A data frame with 110 rows and 2 variables

Sample

Patient identifier

ClinicalResponse

Clinical response to immunotherapy; responder or nonresponder

Source

provided as supplementary file S2 by Van Allen EM et al. in "Genomic correlates of response to CTLA-4 blockade in metastatic melanoma" Science 2015 (PMID: 26359337). Only clinical response and patient variable are saved here

# load supplementary file from VanAllen_Clinical <- read.table("TableS2_Revised.xlsx")

VanAllen_Clinical dplyr::rename("Sample" = patient) dplyr::mutate(ClinicalResponse = ifelse(VanAllen_Clinical$group == "response" , "responder", "nonresponder")) dplyr::select(Sample, ClinicalResponse)

acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.