TMBs_SimulatedPanel: Panel-based TMB to use as input to the correlateTMBvalues and...
In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES
Description
Usage
Format
Source
Description
Table containing estimated tumor mutational burden and metadata (smaple,
filter, size of the sequenced genomic space) obtained by simulating in silico
the TMB that would be estimated using a certain panel design.
Usage
1
Format
A data frame with 4 rows and 5 variables
- Sample
factor, sample identifier
- Filter
factor, type of filter, if any, applied on input mutations
- Sequencing_Size
numeric vector, genomic size targeted by the
sequencing experiment (WES or Panel), in Mb
- Tot_Number_Mutations
numeric vector, tumor mutational burden in the
targeted genomic region
- TMB_per_Mb
numeric vector, global tumor mutational burden expressed
as number of mutations
Source
generated in house as an example of TMB estimated obtained by
simulating in silico the TMB that would be estimated using a certain panel
design.
acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.
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Description Usage Format Source
Description
Table containing estimated tumor mutational burden and metadata (smaple, filter, size of the sequenced genomic space) obtained by simulating in silico the TMB that would be estimated using a certain panel design.
Usage
1 |
Format
A data frame with 4 rows and 5 variables
- Sample
factor, sample identifier
- Filter
factor, type of filter, if any, applied on input mutations
- Sequencing_Size
numeric vector, genomic size targeted by the sequencing experiment (WES or Panel), in Mb
- Tot_Number_Mutations
numeric vector, tumor mutational burden in the targeted genomic region
- TMB_per_Mb
numeric vector, global tumor mutational burden expressed as number of mutations
Source
generated in house as an example of TMB estimated obtained by simulating in silico the TMB that would be estimated using a certain panel design.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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