annotateTMB: Annotate TMB dataframe with clinical outcome
In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES
Description
Usage
Arguments
Value
Examples
Description
Add a new column to the dataframe with the clinical outcome
Usage
1
annotateTMB(TMB_df, ClinicalData)
Arguments
TMB_df
output from applyTMB()
ClinicalData
Simple dataframe with at least two columns, a
Sample column and a ClinicalResponder colum
Value
annotate dataframe which combines both TMB and clinical responders
Examples
1
2
3
4
5
# Import datasets
data(TMB_VanAllen)
data("VanAllen_Clinical")
# Annotate TMB with clinical reponse
TMB_clincal_response <- annotateTMB(TMB_df = TMB_VanAllen, ClinicalData = VanAllen_Clinical )
acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Add a new column to the dataframe with the clinical outcome
Usage
1 | annotateTMB(TMB_df, ClinicalData)
|
Arguments
TMB_df |
output from applyTMB() |
ClinicalData |
Simple dataframe with at least two columns, a Sample column and a ClinicalResponder colum |
Value
annotate dataframe which combines both TMB and clinical responders
Examples
1 2 3 4 5 | # Import datasets
data(TMB_VanAllen)
data("VanAllen_Clinical")
# Annotate TMB with clinical reponse
TMB_clincal_response <- annotateTMB(TMB_df = TMB_VanAllen, ClinicalData = VanAllen_Clinical )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.