ExamplePaneldesign: Dataset containing sequencing design of a panel
In acc-bioinfo/TMBleR: Tumor Mutational Burden Quantification From Gene Panels And WES
Description
Usage
Format
Source
Description
Sequencing design of the panel used as examples.
Usage
1
Format
A GRanges object with 8320 ranges and 2 metadata columns
- seqnames
Chromosome name
- ranges
Start-End genomic positions
- strand
'+', '-' or '*' for undefined
- V4
hgnc gene symbol and start-end cooridnates
- V6
hgnc gene symbol and Pool (1 or 2)
Source
In house panel design, provided as example.
design_file_path = system.file( "data-raw"
, "ExamplePaneldesign.bed"
, package = "TMBleR"
, mustWork = TRUE)
design <- readDesign(
filename = design_file_path
, assembly = "hg19
, ids = "entrezgene_id")
acc-bioinfo/TMBleR documentation built on Dec. 18, 2021, 10:21 p.m.
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Description Usage Format Source
Description
Sequencing design of the panel used as examples.
Usage
1 |
Format
A GRanges object with 8320 ranges and 2 metadata columns
- seqnames
Chromosome name
- ranges
Start-End genomic positions
- strand
'+', '-' or '*' for undefined
- V4
hgnc gene symbol and start-end cooridnates
- V6
hgnc gene symbol and Pool (1 or 2)
Source
In house panel design, provided as example. design_file_path = system.file( "data-raw" , "ExamplePaneldesign.bed" , package = "TMBleR" , mustWork = TRUE)
design <- readDesign( filename = design_file_path , assembly = "hg19 , ids = "entrezgene_id")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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