API for alexthiery/scHelper
R package containing helper functions for single cell analysis
| Global functions | |
|---|---|
| ArchRAddUniqueIdsToSe | Man page Source code |
| ArchRCellCounting | Man page Source code |
| ArchRCellCountsHeatmap | Man page Source code |
| ArchR_ClustRes | Man page Source code |
| ArchR_ExtractIds | Man page Source code |
| ArchR_ExtractMeansFromSe | Man page Source code |
| ArchR_FeaturePlotGrid | Man page Source code |
| ArchR_IdentifyOutliers | Man page Source code |
| ArchR_PlotMarkerHeatmap | Man page Source code |
| ArchR_PseudoreplicateCounts | Man page Source code |
| ArchR_SplitbyStage | Man page Source code |
| ArchR_Subset | Man page Source code |
| AverageGeneModules | Man page Source code |
| BoxPlot | Man page |
| CellLabelPieCharts | Man page Source code |
| CheckIntegration | Man page Source code |
| ClustRes | Man page Source code |
| ClustStagePlot | Man page Source code |
| ClusterClassification | Man page Source code |
| ClusterDimplot | Man page Source code |
| CreateCellTypeAnnotation | Man page Source code |
| CreateStageAnnotation | Man page Source code |
| DEGeneModules | Man page Source code |
| ElbowCutoff | Man page Source code |
| ExportAntlerModules | Man page Source code |
| ExtractModuleContents | Man page Source code |
| GeneModuleClassify | Man page |
| GeneModuleOrder | Man page |
| GeneModulePheatmap | Man page |
| IdentifyOutliers | Man page Source code |
| MultiFeaturePlot | Man page Source code |
| OrderCellClusters | Man page Source code |
| PCALevelComparison | Man page Source code |
| PlotCelltype | Man page Source code |
| PlotGeneVariance | Man page Source code |
| PlotOutliers | Man page Source code |
| PrepPeakModuleHeatmap | Man page |
| QCPlot | Man page Source code |
| SEACells_MetacellFrequencies | Man page Source code |
| SEACells_PiechartProportionThreshold | Man page Source code |
| SEACells_SummariseGeneScoreMatrix | Man page Source code |
| SEACells_SummariseSeuratData | Man page Source code |
| SubsetGeneModules | Man page Source code |
| TenxPheatmap | Man page Source code |
| UMAPGeneList | Man page Source code |
| ggPlotColours | Man page Source code |
