ArchR_PlotMarkerHeatmap: ArchR function: Plots marker heatmap

In alexthiery/scHelper: R package containing helper functions for single cell analysis

ArchR function: Plots marker heatmap

Description

This function takes matrix from seMarker and plots heatmap

Usage

ArchR_PlotMarkerHeatmap(
  mat,
  pal = viridis::magma(100),
  labelRows = FALSE,
  fontSizeRows = 12,
  labelCols = TRUE,
  fontSizeCols = 12,
  cluster_columns = TRUE,
  cluster_rows = TRUE
)

Arguments

mat	data matrix, created by: Log2norm(extract_means_from_se(seMarker))
pal	color palatte for heatmap cells
labelRows	boolean, whether to label rows
fontSizeRows	font size for row labels
labelCols	boolean, whether to label cols
fontSizeCols	font size for col labels
cluster_columns	boolean, whether to cluster cols
cluster_rows	boolean, whether to cluster rows

Value

Heatmap of marker features

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.