ClusterDimplot: Cluster Dimplot

In alexthiery/scHelper: R package containing helper functions for single cell analysis

Cluster Dimplot

Description

This function plots UMAPs for selected clusters of interest

Usage

ClusterDimplot(
  seurat_object,
  group_by = "seurat_clusters",
  clusters,
  cluster_col = "seurat_clusters",
  plot_title = NA,
  pt_size = 0.2,
  xlim = c(-15, 15),
  ylim = c(-15, 15),
  nrow = 1,
  shuffle = TRUE,
  seed = 123
)

Arguments

seurat_object	Seurat object
group_by	[e-mail] column to group cells by in DimPlots
clusters	array of clusters to subset and plot
cluster_col	[e-mail] column for which clusters are found in
nrow	number of rows to pass to grid.arrange
shuffle	randomly plot cells in order to prevent hiding certain populations when overplotting
seed	set seed for plotting consistency when shuffle is TRUE

Value

plot generated by grid arrange

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.