ArchR_ExtractIds: ArchR function: Extract IDs for plotting

In alexthiery/scHelper: R package containing helper functions for single cell analysis

ArchR function: Extract IDs for plotting

Description

This function extracts the IDs to be plotted, either by cut off or cut off + top n features

Usage

ArchR_ExtractIds(
  seMarker,
  cutOff = "FDR <= 1 & Log2FC >= 0",
  top_n = TRUE,
  n = 10,
  group_name = "clusters"
)

Arguments

seMarker	the se object created ArchR::getMarkerFeatures
cutOff	string to filter features, eg by FDR or Log2FC
top_n	boolean to extract top n features
n	if top_n is TRUE, extract top n features
group_name	name of grouping to be used when extracting top n features

Value

means matrix for plotting

alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.