PlotOutliers: PlotOutliers
In alexthiery/scHelper: R package containing helper functions for single cell analysis
PlotOutliers R Documentation
PlotOutliers
Description
Plot box plots for elements in seurat_obj@meta.data with quartile cutoffs
Usage
PlotOutliers(
seurat_obj,
y_elements,
group_by = "seurat_clusters",
x_lab = "Cluster ID",
quantiles
)
Arguments
seurat_obj
Seurat object
y_elements
array of column names in seurat_object@meta.data to be plotted
group_by
seurat_object@meta.data column containing cell clusters
x_lab
label for x axis
quantiles
Percent quantiles to plot on bar plots. Can be either NULL, a single element, or an array (length 2) with lower and upper percent quantiles
Value
list of box plots for each y_element
alexthiery/scHelper documentation built on Aug. 26, 2023, 3:42 p.m.
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| PlotOutliers | R Documentation |
PlotOutliers
Description
Plot box plots for elements in seurat_obj@meta.data with quartile cutoffs
Usage
PlotOutliers(
seurat_obj,
y_elements,
group_by = "seurat_clusters",
x_lab = "Cluster ID",
quantiles
)
Arguments
seurat_obj |
Seurat object |
y_elements |
array of column names in seurat_object@meta.data to be plotted |
group_by |
seurat_object@meta.data column containing cell clusters |
x_lab |
label for x axis |
quantiles |
Percent quantiles to plot on bar plots. Can be either NULL, a single element, or an array (length 2) with lower and upper percent quantiles |
Value
list of box plots for each y_element
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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